scater

Extra Credit builds an outline of scater's docs the first time your work uses it. Until then, start at the official documentation.

• scuttle Legacy Utilities for Single-Cell RNA-Seq Analysis
• biovizBase Basic graphic utilities for visualization of genomic data.
• batchelor Single-Cell Batch Correction Methods
• sva Surrogate Variable Analysis
• ScaledMatrix Creating a DelayedMatrix of Scaled and Centered Values
• vsn Variance stabilization and calibration for microarray data
• mzR parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
• BiocStyle Standard styles for vignettes and other Bioconductor documents
• phyloseq Handling and analysis of high-throughput microbiome census data
• Gviz Plotting data and annotation information along genomic coordinates
• xcms LC-MS and GC-MS Data Analysis
• interactiveDisplayBase Base package for enabling powerful shiny web displays of Bioconductor objects