scuttle

Extra Credit builds an outline of scuttle's docs the first time your work uses it. Until then, start at the official documentation.

• ensembldb Utilities to create and use Ensembl-based annotation databases
• UCSC.utils Low-level utilities to retrieve data from the UCSC Genome Browser
• ProtGenerics Generic infrastructure for Bioconductor mass spectrometry packages
• BiocSingular Singular Value Decomposition for Bioconductor Packages
• GSEABase Gene set enrichment data structures and methods
• AnnotationFilter Facilities for Filtering Bioconductor Annotation Resources
• biovizBase Basic graphic utilities for visualization of genomic data.
• batchelor Single-Cell Batch Correction Methods
• sva Surrogate Variable Analysis
• ScaledMatrix Creating a DelayedMatrix of Scaled and Centered Values
• vsn Variance stabilization and calibration for microarray data
• scater Single-Cell Analysis Toolkit for Gene Expression Data in R