sva

Extra Credit builds an outline of sva's docs the first time your work uses it. Until then, start at the official documentation.

• BiocSingular Singular Value Decomposition for Bioconductor Packages
• GSEABase Gene set enrichment data structures and methods
• AnnotationFilter Facilities for Filtering Bioconductor Annotation Resources
• scuttle Legacy Utilities for Single-Cell RNA-Seq Analysis
• biovizBase Basic graphic utilities for visualization of genomic data.
• batchelor Single-Cell Batch Correction Methods
• ScaledMatrix Creating a DelayedMatrix of Scaled and Centered Values
• vsn Variance stabilization and calibration for microarray data
• scater Single-Cell Analysis Toolkit for Gene Expression Data in R
• mzR parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
• BiocStyle Standard styles for vignettes and other Bioconductor documents
• phyloseq Handling and analysis of high-throughput microbiome census data