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All 300- batchelor Single-Cell Batch Correction Methods
- sva Surrogate Variable Analysis
- ScaledMatrix Creating a DelayedMatrix of Scaled and Centered Values
- vsn Variance stabilization and calibration for microarray data
- scater Single-Cell Analysis Toolkit for Gene Expression Data in R
- mzR parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
- phyloseq Handling and analysis of high-throughput microbiome census data
- Gviz Plotting data and annotation information along genomic coordinates
- xcms LC-MS and GC-MS Data Analysis
- interactiveDisplayBase Base package for enabling powerful shiny web displays of Bioconductor objects
- minfi Analyze Illumina Infinium DNA methylation arrays
- dada2 Accurate, high-resolution sample inference from amplicon sequencing data