xcms

Extra Credit builds an outline of xcms's docs the first time your work uses it. Until then, start at the official documentation.

• vsn Variance stabilization and calibration for microarray data
• scater Single-Cell Analysis Toolkit for Gene Expression Data in R
• mzR parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
• BiocStyle Standard styles for vignettes and other Bioconductor documents
• phyloseq Handling and analysis of high-throughput microbiome census data
• Gviz Plotting data and annotation information along genomic coordinates
• interactiveDisplayBase Base package for enabling powerful shiny web displays of Bioconductor objects
• minfi Analyze Illumina Infinium DNA methylation arrays
• dada2 Accurate, high-resolution sample inference from amplicon sequencing data
• Seqinfo A simple S4 class for storing basic information about a collection of genomic sequences
• ExperimentHub Client to access ExperimentHub resources
• pcaMethods A collection of PCA methods