Seqinfo
A simple S4 class for storing basic information about a collection of genomic sequences
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- Bioconductor packages
Official docs outline
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phyloseq Handling and analysis of high-throughput microbiome census data
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xcms LC-MS and GC-MS Data Analysis
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minfi Analyze Illumina Infinium DNA methylation arrays
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dada2 Accurate, high-resolution sample inference from amplicon sequencing data
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ExperimentHub Client to access ExperimentHub resources
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pcaMethods A collection of PCA methods
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biomformat An interface package for the BIOM file format
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GSVA Gene Set Variation Analysis for Microarray and RNA-Seq Data
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scran Methods for Single-Cell RNA-Seq Data Analysis
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DNAcopy DNA Copy Number Data Analysis