scran

Extra Credit builds an outline of scran's docs the first time your work uses it. Until then, start at the official documentation.

• dada2 Accurate, high-resolution sample inference from amplicon sequencing data
• Seqinfo A simple S4 class for storing basic information about a collection of genomic sequences
• ExperimentHub Client to access ExperimentHub resources
• pcaMethods A collection of PCA methods
• biomformat An interface package for the BIOM file format
• GSVA Gene Set Variation Analysis for Microarray and RNA-Seq Data
• DNAcopy DNA Copy Number Data Analysis
• KEGGgraph KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
• pathview a tool set for pathway based data integration and visualization
• gcrma Background Adjustment Using Sequence Information
• EBImage Image processing and analysis toolbox for R
• biocViews Categorized views of R package repositories