biovizBase
Basic graphic utilities for visualization of genomic data.
More in Bioconductor packages
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UCSC.utils Low-level utilities to retrieve data from the UCSC Genome Browser
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ProtGenerics Generic infrastructure for Bioconductor mass spectrometry packages
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BiocSingular Singular Value Decomposition for Bioconductor Packages
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GSEABase Gene set enrichment data structures and methods
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AnnotationFilter Facilities for Filtering Bioconductor Annotation Resources
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scuttle Legacy Utilities for Single-Cell RNA-Seq Analysis
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batchelor Single-Cell Batch Correction Methods
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sva Surrogate Variable Analysis
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ScaledMatrix Creating a DelayedMatrix of Scaled and Centered Values
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vsn Variance stabilization and calibration for microarray data
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scater Single-Cell Analysis Toolkit for Gene Expression Data in R
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mzR parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)