minet

Extra Credit builds an outline of minet's docs the first time your work uses it. Until then, start at the official documentation.

• Wrench Wrench normalization for sparse count data
• methylKit DNA methylation analysis from high-throughput bisulfite sequencing results
• SeqArray Data management of large-scale whole-genome sequence variant calls using GDS files
• alabaster.matrix Load and Save Artifacts from File
• ANCOMBC Microbiome differential abudance and correlation analyses with bias correction
• plyranges A fluent interface for manipulating GenomicRanges
• motifStack Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
• bamsignals Extract read count signals from bam files
• fastseg fastseg - a fast segmentation algorithm
• variancePartition Quantify and interpret drivers of variation in multilevel gene expression experiments
• karyoploteR Plot customizable linear genomes displaying arbitrary data
• ropls PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data