plyranges
A fluent interface for manipulating GenomicRanges
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All 300- alabaster.se Load and Save SummarizedExperiments from File
- Wrench Wrench normalization for sparse count data
- methylKit DNA methylation analysis from high-throughput bisulfite sequencing results
- SeqArray Data management of large-scale whole-genome sequence variant calls using GDS files
- alabaster.matrix Load and Save Artifacts from File
- ANCOMBC Microbiome differential abudance and correlation analyses with bias correction
- minet Mutual Information NETworks
- motifStack Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
- bamsignals Extract read count signals from bam files
- fastseg fastseg - a fast segmentation algorithm
- variancePartition Quantify and interpret drivers of variation in multilevel gene expression experiments
- karyoploteR Plot customizable linear genomes displaying arbitrary data