alabaster.matrix

Extra Credit builds an outline of alabaster.matrix's docs the first time your work uses it. Until then, start at the official documentation.

• chromVAR Chromatin Variation Across Regions
• BeadDataPackR Compression of Illumina BeadArray data
• alabaster.se Load and Save SummarizedExperiments from File
• Wrench Wrench normalization for sparse count data
• methylKit DNA methylation analysis from high-throughput bisulfite sequencing results
• SeqArray Data management of large-scale whole-genome sequence variant calls using GDS files
• ANCOMBC Microbiome differential abudance and correlation analyses with bias correction
• plyranges A fluent interface for manipulating GenomicRanges
• minet Mutual Information NETworks
• motifStack Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
• bamsignals Extract read count signals from bam files
• fastseg fastseg - a fast segmentation algorithm