methylKit

Extra Credit builds an outline of methylKit's docs the first time your work uses it. Until then, start at the official documentation.

• alabaster.base Save Bioconductor Objects to File
• Mfuzz Soft clustering of omics time series data
• chromVAR Chromatin Variation Across Regions
• BeadDataPackR Compression of Illumina BeadArray data
• alabaster.se Load and Save SummarizedExperiments from File
• Wrench Wrench normalization for sparse count data
• SeqArray Data management of large-scale whole-genome sequence variant calls using GDS files
• alabaster.matrix Load and Save Artifacts from File
• ANCOMBC Microbiome differential abudance and correlation analyses with bias correction
• plyranges A fluent interface for manipulating GenomicRanges
• minet Mutual Information NETworks
• motifStack Plot stacked logos for single or multiple DNA, RNA and amino acid sequence