ropls
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data
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- Bioconductor packages
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- motifStack Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
- bamsignals Extract read count signals from bam files
- fastseg fastseg - a fast segmentation algorithm
- variancePartition Quantify and interpret drivers of variation in multilevel gene expression experiments
- karyoploteR Plot customizable linear genomes displaying arbitrary data
- MotifDb An Annotated Collection of Protein-DNA Binding Sequence Motifs
- IHW Independent Hypothesis Weighting
- decontam Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
- chipseq chipseq: A package for analyzing chipseq data
- ChAMP Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
- CytoML A GatingML Interface for Cross Platform Cytometry Data Sharing