MotifDb
An Annotated Collection of Protein-DNA Binding Sequence Motifs
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motifStack Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
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bamsignals Extract read count signals from bam files
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fastseg fastseg - a fast segmentation algorithm
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variancePartition Quantify and interpret drivers of variation in multilevel gene expression experiments
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karyoploteR Plot customizable linear genomes displaying arbitrary data
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ropls PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data
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IHW Independent Hypothesis Weighting
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decontam Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
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chipseq chipseq: A package for analyzing chipseq data
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ChAMP Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
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CytoML A GatingML Interface for Cross Platform Cytometry Data Sharing
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ArrayExpress Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet