ChAMP

Extra Credit builds an outline of ChAMP's docs the first time your work uses it. Until then, start at the official documentation.

• karyoploteR Plot customizable linear genomes displaying arbitrary data
• ropls PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data
• MotifDb An Annotated Collection of Protein-DNA Binding Sequence Motifs
• IHW Independent Hypothesis Weighting
• decontam Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
• chipseq chipseq: A package for analyzing chipseq data
• CytoML A GatingML Interface for Cross Platform Cytometry Data Sharing
• ArrayExpress Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
• alabaster.ranges Load and Save Ranges-related Artifacts from File
• alabaster.schemas Schemas for the Alabaster Framework
• CAMERA Collection of annotation related methods for mass spectrometry data
• zinbwave Zero-Inflated Negative Binomial Model for RNA-Seq Data