ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
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Official docs outline
bioconductor.orgExtra Credit builds an outline of ArrayExpress's docs the first time your work uses it. Until then, start at the official documentation.
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MotifDb An Annotated Collection of Protein-DNA Binding Sequence Motifs
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IHW Independent Hypothesis Weighting
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decontam Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
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chipseq chipseq: A package for analyzing chipseq data
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ChAMP Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
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CytoML A GatingML Interface for Cross Platform Cytometry Data Sharing
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alabaster.ranges Load and Save Ranges-related Artifacts from File
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alabaster.schemas Schemas for the Alabaster Framework
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CAMERA Collection of annotation related methods for mass spectrometry data
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zinbwave Zero-Inflated Negative Binomial Model for RNA-Seq Data
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Rdisop Decomposition of Isotopic Patterns
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gypsum Interface to the gypsum REST API