decoupleR

Extra Credit builds an outline of decoupleR's docs the first time your work uses it. Until then, start at the official documentation.

• EBSeq An R package for gene and isoform differential expression analysis of RNA-seq data
• RaggedExperiment Representation of Sparse Experiments and Assays Across Samples
• microRNA Data and functions for dealing with microRNAs
• ggtreeExtra An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"
• piano Platform for integrative analysis of omics data
• seqPattern Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
• DEGseq Identify Differentially Expressed Genes from RNA-seq data
• QuasR Quantify and Annotate Short Reads in R
• PSMatch Handling and Managing Peptide Spectrum Matches
• gwascat representing and modeling data in the EMBL-EBI GWAS catalog
• viper Virtual Inference of Protein-activity by Enriched Regulon analysis
• ctc Cluster and Tree Conversion.