EBSeq

Extra Credit builds an outline of EBSeq's docs the first time your work uses it. Until then, start at the official documentation.

• tradeSeq trajectory-based differential expression analysis for sequencing data
• RankProd Rank Product method for identifying differentially expressed genes with application in meta-analysis
• dittoSeq User Friendly Single-Cell and Bulk RNA Sequencing Visualization
• RCy3 Functions to Access and Control Cytoscape
• densvis Density-Preserving Data Visualization via Non-Linear Dimensionality Reduction
• safe Significance Analysis of Function and Expression
• RaggedExperiment Representation of Sparse Experiments and Assays Across Samples
• microRNA Data and functions for dealing with microRNAs
• ggtreeExtra An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"
• piano Platform for integrative analysis of omics data
• seqPattern Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
• decoupleR decoupleR: Ensemble of computational methods to infer biological activities from omics data