piano
Platform for integrative analysis of omics data
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densvis Density-Preserving Data Visualization via Non-Linear Dimensionality Reduction
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safe Significance Analysis of Function and Expression
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EBSeq An R package for gene and isoform differential expression analysis of RNA-seq data
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RaggedExperiment Representation of Sparse Experiments and Assays Across Samples
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microRNA Data and functions for dealing with microRNAs
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ggtreeExtra An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"
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seqPattern Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
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decoupleR decoupleR: Ensemble of computational methods to infer biological activities from omics data
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DEGseq Identify Differentially Expressed Genes from RNA-seq data
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QuasR Quantify and Annotate Short Reads in R
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PSMatch Handling and Managing Peptide Spectrum Matches
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gwascat representing and modeling data in the EMBL-EBI GWAS catalog