gwascat
representing and modeling data in the EMBL-EBI GWAS catalog
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piano Platform for integrative analysis of omics data
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seqPattern Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
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decoupleR decoupleR: Ensemble of computational methods to infer biological activities from omics data
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DEGseq Identify Differentially Expressed Genes from RNA-seq data
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QuasR Quantify and Annotate Short Reads in R
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PSMatch Handling and Managing Peptide Spectrum Matches
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viper Virtual Inference of Protein-activity by Enriched Regulon analysis
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ctc Cluster and Tree Conversion.
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celda CEllular Latent Dirichlet Allocation
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SeqVarTools Tools for variant data
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csaw ChIP-Seq Analysis with Windows
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GLAD Gain and Loss Analysis of DNA