viper

Extra Credit builds an outline of viper's docs the first time your work uses it. Until then, start at the official documentation.

• seqPattern Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
• decoupleR decoupleR: Ensemble of computational methods to infer biological activities from omics data
• DEGseq Identify Differentially Expressed Genes from RNA-seq data
• QuasR Quantify and Annotate Short Reads in R
• PSMatch Handling and Managing Peptide Spectrum Matches
• gwascat representing and modeling data in the EMBL-EBI GWAS catalog
• ctc Cluster and Tree Conversion.
• celda CEllular Latent Dirichlet Allocation
• SeqVarTools Tools for variant data
• csaw ChIP-Seq Analysis with Windows
• GLAD Gain and Loss Analysis of DNA
• MSstats Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments