tradeSeq

Extra Credit builds an outline of tradeSeq's docs the first time your work uses it. Until then, start at the official documentation.

• singscore Rank-based single-sample gene set scoring method
• MLInterfaces Uniform interfaces to R machine learning procedures for data in Bioconductor containers
• SRAdb A compilation of metadata from NCBI SRA and tools
• RcisTarget RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions
• UCell Rank-based signature enrichment analysis for single-cell data
• EnrichedHeatmap Making Enriched Heatmaps
• RankProd Rank Product method for identifying differentially expressed genes with application in meta-analysis
• dittoSeq User Friendly Single-Cell and Bulk RNA Sequencing Visualization
• RCy3 Functions to Access and Control Cytoscape
• densvis Density-Preserving Data Visualization via Non-Linear Dimensionality Reduction
• safe Significance Analysis of Function and Expression
• EBSeq An R package for gene and isoform differential expression analysis of RNA-seq data