cummeRbund

Extra Credit builds an outline of cummeRbund's docs the first time your work uses it. Until then, start at the official documentation.

• Category Category Analysis
• topGO Enrichment Analysis for Gene Ontology
• ggbio Visualization tools for genomic data
• GOstats Tools for manipulating GO and microarrays
• AnnotationForge Tools for building SQLite-based annotation data packages
• tximport Import and summarize transcript-level estimates for transcript- and gene-level analysis
• apeglm Approximate posterior estimation for GLM coefficients
• EnhancedVolcano Publication-ready volcano plots with enhanced colouring and labeling
• DirichletMultinomial Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
• metapod Meta-Analyses on P-Values of Differential Analyses
• seqLogo Sequence logos for DNA sequence alignments
• oligo Preprocessing tools for oligonucleotide arrays