topGO

Extra Credit builds an outline of topGO's docs the first time your work uses it. Until then, start at the official documentation.

• affyPLM Methods for fitting probe-level models
• illuminaio Parsing Illumina Microarray Output Files
• MeSHDbi DBI to construct MeSH-related package from sqlite file
• MultiAssayExperiment Software for the integration of multi-omics experiments in Bioconductor
• bumphunter Bump Hunter
• Category Category Analysis
• ggbio Visualization tools for genomic data
• GOstats Tools for manipulating GO and microarrays
• AnnotationForge Tools for building SQLite-based annotation data packages
• tximport Import and summarize transcript-level estimates for transcript- and gene-level analysis
• cummeRbund Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
• apeglm Approximate posterior estimation for GLM coefficients