AnnotationForge

Extra Credit builds an outline of AnnotationForge's docs the first time your work uses it. Until then, start at the official documentation.

• MultiAssayExperiment Software for the integration of multi-omics experiments in Bioconductor
• bumphunter Bump Hunter
• Category Category Analysis
• topGO Enrichment Analysis for Gene Ontology
• ggbio Visualization tools for genomic data
• GOstats Tools for manipulating GO and microarrays
• tximport Import and summarize transcript-level estimates for transcript- and gene-level analysis
• cummeRbund Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
• apeglm Approximate posterior estimation for GLM coefficients
• EnhancedVolcano Publication-ready volcano plots with enhanced colouring and labeling
• DirichletMultinomial Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
• metapod Meta-Analyses on P-Values of Differential Analyses