ggbio
Visualization tools for genomic data
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illuminaio Parsing Illumina Microarray Output Files
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MeSHDbi DBI to construct MeSH-related package from sqlite file
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MultiAssayExperiment Software for the integration of multi-omics experiments in Bioconductor
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bumphunter Bump Hunter
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Category Category Analysis
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topGO Enrichment Analysis for Gene Ontology
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GOstats Tools for manipulating GO and microarrays
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AnnotationForge Tools for building SQLite-based annotation data packages
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tximport Import and summarize transcript-level estimates for transcript- and gene-level analysis
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cummeRbund Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
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apeglm Approximate posterior estimation for GLM coefficients
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EnhancedVolcano Publication-ready volcano plots with enhanced colouring and labeling