systemPipeR

Extra Credit builds an outline of systemPipeR's docs the first time your work uses it. Until then, start at the official documentation.

• ROC utilities for ROC, with microarray focus
• DiffBind Differential Binding Analysis of ChIP-Seq Peak Data
• ncdfFlow ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
• globaltest Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
• MAST Model-based Analysis of Single Cell Transcriptomics
• goseq Gene Ontology analyser for RNA-seq and other length biased data
• SNPRelate Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
• widgetTools Creates an interactive tcltk widget
• bsseq Analyze, manage and store whole-genome methylation data
• msa Multiple Sequence Alignment
• tkWidgets R based tk widgets
• mosaics MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)