bsseq

Extra Credit builds an outline of bsseq's docs the first time your work uses it. Until then, start at the official documentation.

• globaltest Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
• MAST Model-based Analysis of Single Cell Transcriptomics
• goseq Gene Ontology analyser for RNA-seq and other length biased data
• systemPipeR systemPipeR: A Multipurpose Workflow Management System for Reproducible Data Analysis
• SNPRelate Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
• widgetTools Creates an interactive tcltk widget
• msa Multiple Sequence Alignment
• tkWidgets R based tk widgets
• mosaics MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
• basilisk.utils Centralized Conda Installation for Bioconductor Packages
• AUCell AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
• metagenomeSeq Statistical analysis for sparse high-throughput sequencing