MAST

Extra Credit builds an outline of MAST's docs the first time your work uses it. Until then, start at the official documentation.

• pwalign Perform pairwise sequence alignments
• MassSpecWavelet Peak Detection for Mass Spectrometry data using wavelet-based algorithms
• ROC utilities for ROC, with microarray focus
• DiffBind Differential Binding Analysis of ChIP-Seq Peak Data
• ncdfFlow ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
• globaltest Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
• goseq Gene Ontology analyser for RNA-seq and other length biased data
• systemPipeR systemPipeR: A Multipurpose Workflow Management System for Reproducible Data Analysis
• SNPRelate Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
• widgetTools Creates an interactive tcltk widget
• bsseq Analyze, manage and store whole-genome methylation data
• msa Multiple Sequence Alignment