DiffBind

Extra Credit builds an outline of DiffBind's docs the first time your work uses it. Until then, start at the official documentation.

• regioneR Association analysis of genomic regions based on permutation tests
• BiocCheck Bioconductor-specific package checks
• ChIPpeakAnno Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of geno
• pwalign Perform pairwise sequence alignments
• MassSpecWavelet Peak Detection for Mass Spectrometry data using wavelet-based algorithms
• ROC utilities for ROC, with microarray focus
• ncdfFlow ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
• globaltest Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
• MAST Model-based Analysis of Single Cell Transcriptomics
• goseq Gene Ontology analyser for RNA-seq and other length biased data
• systemPipeR systemPipeR: A Multipurpose Workflow Management System for Reproducible Data Analysis
• SNPRelate Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data