BiocCheck
Bioconductor-specific package checks
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gdsfmt R Interface to CoreArray Genomic Data Structure (GDS) Files
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maftools Summarize, Analyze and Visualize MAF Files
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DEXSeq Inference of differential exon usage in RNA-Seq
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basilisk Freezing Python Dependencies Inside Bioconductor Packages
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CNEr CNE Detection and Visualization
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regioneR Association analysis of genomic regions based on permutation tests
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ChIPpeakAnno Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of…
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pwalign Perform pairwise sequence alignments
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MassSpecWavelet Peak Detection for Mass Spectrometry data using wavelet-based algorithms
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ROC utilities for ROC, with microarray focus
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DiffBind Differential Binding Analysis of ChIP-Seq Peak Data
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ncdfFlow ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.