CNEr

Extra Credit builds an outline of CNEr's docs the first time your work uses it. Until then, start at the official documentation.

• cigarillo Efficient manipulation of CIGAR strings
• DropletUtils Utilities for Handling Single-Cell Droplet Data
• gdsfmt R Interface to CoreArray Genomic Data Structure (GDS) Files
• maftools Summarize, Analyze and Visualize MAF Files
• DEXSeq Inference of differential exon usage in RNA-Seq
• basilisk Freezing Python Dependencies Inside Bioconductor Packages
• regioneR Association analysis of genomic regions based on permutation tests
• BiocCheck Bioconductor-specific package checks
• ChIPpeakAnno Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of geno
• pwalign Perform pairwise sequence alignments
• MassSpecWavelet Peak Detection for Mass Spectrometry data using wavelet-based algorithms
• ROC utilities for ROC, with microarray focus