rtracklayer

Extra Credit builds an outline of rtracklayer's docs the first time your work uses it. Until then, start at the official documentation.

• BiocParallel Bioconductor facilities for parallel evaluation
• AnnotationDbi Manipulation of SQLite-based annotations in Bioconductor
• zlibbioc An R packaged zlib-1.2.5
• limma Linear Models for Microarray and Omics Data
• MatrixGenerics S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
• Rsamtools Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
• biomaRt Interface to BioMart databases (i.e. Ensembl)
• KEGGREST Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
• GenomicAlignments Representation and manipulation of short genomic alignments
• annotate Annotation for microarrays
• flowCore flowCore: Basic structures for flow cytometry data
• DESeq2 Differential gene expression analysis based on the negative binomial distribution