DESeq2
Differential gene expression analysis based on the negative binomial distribution
More in Bioconductor packages
All 300-
rtracklayer R interface to genome annotation files and the UCSC genome browser
-
biomaRt Interface to BioMart databases (i.e. Ensembl)
-
KEGGREST Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
-
GenomicAlignments Representation and manipulation of short genomic alignments
-
annotate Annotation for microarrays
-
flowCore flowCore: Basic structures for flow cytometry data
-
edgeR Empirical Analysis of Digital Gene Expression Data in R
-
GenomicFeatures Query the gene models of a given organism/assembly
-
genefilter genefilter: methods for filtering genes from high-throughput experiments
-
Rhtslib HTSlib high-throughput sequencing library as an R package
-
graph graph: A package to handle graph data structures
-
rhdf5 R Interface to HDF5