GenomicAlignments
Representation and manipulation of short genomic alignments
More in Bioconductor packages
All 300-
limma Linear Models for Microarray and Omics Data
-
MatrixGenerics S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
-
Rsamtools Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
-
rtracklayer R interface to genome annotation files and the UCSC genome browser
-
biomaRt Interface to BioMart databases (i.e. Ensembl)
-
KEGGREST Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
-
annotate Annotation for microarrays
-
flowCore flowCore: Basic structures for flow cytometry data
-
DESeq2 Differential gene expression analysis based on the negative binomial distribution
-
edgeR Empirical Analysis of Digital Gene Expression Data in R
-
GenomicFeatures Query the gene models of a given organism/assembly
-
genefilter genefilter: methods for filtering genes from high-throughput experiments