BiocParallel

Extra Credit builds an outline of BiocParallel's docs the first time your work uses it. Until then, start at the official documentation.

• GenomeInfoDb Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
• XVector Foundation of external vector representation and manipulation in Bioconductor
• Biostrings Efficient manipulation of biological strings
• GenomicRanges Representation and manipulation of genomic intervals
• DelayedArray A unified framework for working transparently with on-disk and in-memory array-like datasets
• SummarizedExperiment A container (S4 class) for matrix-like assays
• AnnotationDbi Manipulation of SQLite-based annotations in Bioconductor
• zlibbioc An R packaged zlib-1.2.5
• limma Linear Models for Microarray and Omics Data
• MatrixGenerics S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
• Rsamtools Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
• rtracklayer R interface to genome annotation files and the UCSC genome browser