affycoretools

Extra Credit builds an outline of affycoretools's docs the first time your work uses it. Until then, start at the official documentation.

• quantsmooth Quantile smoothing and genomic visualization of array data
• GlobalAncova Global test for groups of variables via model comparisons
• MsFeatures Functionality for Mass Spectrometry Features
• ALDEx2 Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
• Icens NPMLE for Censored and Truncated Data
• Heatplus Heatmaps with row and/or column covariates and colored clusters
• GENIE3 GEne Network Inference with Ensemble of trees
• MetaboCoreUtils Core Utils for Metabolomics Data
• SPIA Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
• NOISeq Exploratory analysis and differential expression for RNA-seq data
• GWASTools Tools for Genome Wide Association Studies
• PCAtools PCAtools: Everything Principal Components Analysis