ALDEx2

Extra Credit builds an outline of ALDEx2's docs the first time your work uses it. Until then, start at the official documentation.

• Rdisop Decomposition of Isotopic Patterns
• gypsum Interface to the gypsum REST API
• baySeq Empirical Bayesian analysis of patterns of differential expression in count data
• quantsmooth Quantile smoothing and genomic visualization of array data
• GlobalAncova Global test for groups of variables via model comparisons
• MsFeatures Functionality for Mass Spectrometry Features
• Icens NPMLE for Censored and Truncated Data
• Heatplus Heatmaps with row and/or column covariates and colored clusters
• affycoretools Functions useful for those doing repetitive analyses with Affymetrix GeneChips
• GENIE3 GEne Network Inference with Ensemble of trees
• MetaboCoreUtils Core Utils for Metabolomics Data
• SPIA Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations