PCAtools

Extra Credit builds an outline of PCAtools's docs the first time your work uses it. Until then, start at the official documentation.

• affycoretools Functions useful for those doing repetitive analyses with Affymetrix GeneChips
• GENIE3 GEne Network Inference with Ensemble of trees
• MetaboCoreUtils Core Utils for Metabolomics Data
• SPIA Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
• NOISeq Exploratory analysis and differential expression for RNA-seq data
• GWASTools Tools for Genome Wide Association Studies
• GreyListChIP Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
• genomation Summary, annotation and visualization of genomic data
• MultiDataSet Implementation of MultiDataSet and ResultSet
• singscore Rank-based single-sample gene set scoring method
• MLInterfaces Uniform interfaces to R machine learning procedures for data in Bioconductor containers
• SRAdb A compilation of metadata from NCBI SRA and tools