Rsubread

Extra Credit builds an outline of Rsubread's docs the first time your work uses it. Until then, start at the official documentation.

• mzID An mzIdentML parser for R
• dir.expiry Managing Expiration for Cache Directories
• SingleR Reference-Based Single-Cell RNA-Seq Annotation
• oligoClasses Classes for high-throughput arrays supported by oligo and crlmm
• ConsensusClusterPlus ConsensusClusterPlus
• graphite GRAPH Interaction from pathway Topological Environment
• lumi BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
• aroma.light Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
• affxparser Affymetrix File Parsing SDK
• cytolib C++ infrastructure for representing and interacting with the gated cytometry data
• DECIPHER Tools for curating, analyzing, and manipulating biological sequences
• mixOmics Omics Data Integration Project