tximeta
Transcript Quantification Import with Automatic Metadata
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- Bioconductor packages
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GenomicFiles Distributed computing by file or by range
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ballgown Flexible, isoform-level differential expression analysis
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destiny Creates diffusion maps
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lpsymphony Symphony integer linear programming solver in R
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DSS Dispersion shrinkage for sequencing data
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DMRcate Methylation array and sequencing spatial analysis methods
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infercnv Infer Copy Number Variation from Single-Cell RNA-Seq Data
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ggcyto Visualize Cytometry data with ggplot
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Glimma Interactive visualizations for gene expression analysis
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survcomp Performance Assessment and Comparison for Survival Analysis
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RUVSeq Remove Unwanted Variation from RNA-Seq Data
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QFeatures Quantitative features for mass spectrometry data