MSnbase

Extra Credit builds an outline of MSnbase's docs the first time your work uses it. Until then, start at the official documentation.

• pathview a tool set for pathway based data integration and visualization
• gcrma Background Adjustment Using Sequence Information
• EBImage Image processing and analysis toolbox for R
• biocViews Categorized views of R package repositories
• bluster Clustering Algorithms for Bioconductor
• ReactomePA Reactome Pathway Analysis
• marray Exploratory analysis for two-color spotted microarray data
• ResidualMatrix Creating a DelayedMatrix of Regression Residuals
• siggenes Multiple Testing using SAM and Efron's Empirical Bayes Approaches
• TCGAbiolinks TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
• OrganismDbi Software to enable the smooth interfacing of different database packages
• affyPLM Methods for fitting probe-level models