ReactomePA
Reactome Pathway Analysis
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bluster Clustering Algorithms for Bioconductor
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MSnbase Base Functions and Classes for Mass Spectrometry and Proteomics
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marray Exploratory analysis for two-color spotted microarray data
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ResidualMatrix Creating a DelayedMatrix of Regression Residuals
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siggenes Multiple Testing using SAM and Efron's Empirical Bayes Approaches
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TCGAbiolinks TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
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OrganismDbi Software to enable the smooth interfacing of different database packages