microbiome

Extra Credit builds an outline of microbiome's docs the first time your work uses it. Until then, start at the official documentation.

• basilisk.utils Centralized Conda Installation for Bioconductor Packages
• AUCell AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
• metagenomeSeq Statistical analysis for sparse high-throughput sequencing
• flowStats Statistical methods for the analysis of flow cytometry data
• scDblFinder scDblFinder
• ReportingTools Tools for making reports in various formats
• TrajectoryUtils Single-Cell Trajectory Analysis Utilities
• mia Microbiome analysis
• ChemmineOB R interface to a subset of OpenBabel functionalities
• flowClust Clustering for Flow Cytometry
• beadarray Quality assessment and low-level analysis for Illumina BeadArray data
• gage Generally Applicable Gene-set Enrichment for Pathway Analysis