TCGAutils
TCGA utility functions for data management
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RUVSeq Remove Unwanted Variation from RNA-Seq Data
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QFeatures Quantitative features for mass spectrometry data
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FlowSOM Using self-organizing maps for visualization and interpretation of cytometry data
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wateRmelon Illumina DNA methylation array normalization and metrics
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motifmatchr Fast Motif Matching in R
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missMethyl Analysing Illumina HumanMethylation BeadChip Data
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Spectra Spectra Infrastructure for Mass Spectrometry Data
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TreeSummarizedExperiment TreeSummarizedExperiment: a S4 Class for Data with Tree Structures
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zellkonverter Conversion Between scRNA-seq Objects
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alabaster.base Save Bioconductor Objects to File
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Mfuzz Soft clustering of omics time series data
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chromVAR Chromatin Variation Across Regions