fgsea
Fast Gene Set Enrichment Analysis
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clusterProfiler A Universal Enrichment Tool for Interpreting Omics Data
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HDF5Array HDF5 datasets as array-like objects in R
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multtest Resampling-based multiple hypothesis testing
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enrichplot Visualization of Functional Enrichment Result
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qvalue Q-value estimation for false discovery rate control
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DOSE Disease Ontology Semantic and Enrichment analysis
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GEOquery Get data from NCBI Gene Expression Omnibus (GEO)
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rhdf5filters HDF5 Compression Filters
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treeio Base Classes and Functions for Phylogenetic Tree Input and Output
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SingleCellExperiment S4 Classes for Single Cell Data