AnnotationHub

Extra Credit builds an outline of AnnotationHub's docs the first time your work uses it. Until then, start at the official documentation.

• ShortRead FASTQ input and manipulation
• beachmat Compiling Bioconductor to Handle Each Matrix Type
• Rgraphviz Provides plotting capabilities for R graph objects
• RBGL An interface to the BOOST graph library
• affyio Tools for parsing Affymetrix data files
• sparseMatrixStats Summary Statistics for Rows and Columns of Sparse Matrices
• ensembldb Utilities to create and use Ensembl-based annotation databases
• UCSC.utils Low-level utilities to retrieve data from the UCSC Genome Browser
• ProtGenerics Generic infrastructure for Bioconductor mass spectrometry packages
• BiocSingular Singular Value Decomposition for Bioconductor Packages
• GSEABase Gene set enrichment data structures and methods
• AnnotationFilter Facilities for Filtering Bioconductor Annotation Resources