R packages
2,000 in Packages and libraries, most used first. Page 9 of 10.
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caper Comparative Analyses of Phylogenetics and Evolution in R - pcse Panel-Corrected Standard Error Estimation in R
- DMwR2 Functions and Data for the Second Edition of "Data Mining with R"
- mlt Most Likely Transformations
- dotty The Unpacking Dot Operator
- ftExtra Extensions for 'Flextable'
- stabs Stability Selection with Error Control
- corrgram Plot a Correlogram
- brand.yml Unified Branding with a Simple YAML File
- textdata Download and Load Various Text Datasets
- CBPS Covariate Balancing Propensity Score
- svDialogs 'SciViews::R' - Standard Dialog Boxes for Windows, MacOS and Linuxes
- ggdark Dark Mode for 'ggplot2' Themes
- ggseqlogo A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos
- alluvial Alluvial Diagrams
- LiblineaR Linear Predictive Models Based on the LIBLINEAR C/C++ Library
- import An Import Mechanism for R
- FactoInvestigate Automatic Description of Factorial Analysis
- lexicon Lexicons for Text Analysis
- ggstance Horizontal 'ggplot2' Components
- seminr Building and Estimating Structural Equation Models
- cffr Generate Citation File Format ('CFF') Metadata
- sendmailR Send Email Using R
- assertive.strings Assertions to Check Properties of Strings
- Factoshiny Perform Factorial Analysis from 'FactoMineR' with a Shiny Application
- PresenceAbsence Presence-Absence Model Evaluation
- fma Data Sets from "Forecasting: Methods and Applications" by Makridakis, Wheelwright & Hyndman (1998)
- ggprism A 'ggplot2' Extension Inspired by 'GraphPad Prism'
- DirichletReg Dirichlet Regression
- assertive.datetimes Assertions to Check Properties of Dates and Times
- pinfsc50 Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for 17 Samples of 'P. Infestans" and 1 'P. Mirabilis'
- FinTS Companion to Tsay (2005) Analysis of Financial Time Series
- bigutilsr Utility Functions for Large-scale Data
- dplR Dendrochronology Program Library in R
- spocc Interface to Species Occurrence Data Sources
- predicts Spatial Prediction Tools
- Stat2Data Datasets for Stat2
- forestploter Create a Flexible Forest Plot
- assertive.data Assertions to Check Properties of Data
- assertive.data.uk Assertions to Check Properties of Strings
- assertive.data.us Assertions to Check Properties of Strings
- pkgdepends Package Dependency Resolution and Downloads
- biclust BiCluster Algorithms
- locatexec Detection and Localization of Executable Files
- transport Computation of Optimal Transport Plans and Wasserstein Distances
- argparse Command Line Optional and Positional Argument Parser
- ENMeval Automated Tuning and Evaluations of Ecological Niche Models
- svGUI 'SciViews::R' - Manage GUIs in R
- qqman Q-Q and Manhattan Plots for GWAS Data
- multitaper Spectral Analysis Tools using the Multitaper Method
- multimode Mode Testing and Exploring
- huge High-Dimensional Undirected Graph Estimation
- openair Tools for the Analysis of Air Pollution Data
- Rserve Versatile R Server
- asd Simulations for Adaptive Seamless Designs
- VineCopula Statistical Inference of Vine Copulas
- SoupX Single Cell mRNA Soup eXterminator
- NADA Nondetects and Data Analysis for Environmental Data
- lda Collapsed Gibbs Sampling Methods for Topic Models
- ncvreg Regularization Paths for SCAD and MCP Penalized Regression Models
- ggalt Extra Coordinate Systems, 'Geoms', Statistical Transformations, Scales and Fonts for 'ggplot2'
- mlflow Interface to 'MLflow'
- ggstream Create Streamplots in 'ggplot2'
- smoof Single and Multi-Objective Optimization Test Functions
- smooth Forecasting Using State Space Models
- antiword Extract Text from Microsoft Word Documents
- adbcdrivermanager 'Arrow' Database Connectivity ('ADBC') Driver Manager
- distro Linux Distribution Properties
- KMsurv Datasets from Klein and Moeschberger (1997), Survival Analysis
- duckspatial R Interface to 'DuckDB' Database with Spatial Extension
- aricode Efficient Computations of Standard Clustering Comparison Measures
- tableHTML A Tool to Create HTML Tables
- automap Automatic Interpolation Package
- bmp Read Windows Bitmap (BMP) Images
- slackr Send Messages, Images, R Objects and Files to 'Slack' Channels/Users
- spaMM Mixed-Effect Models, with or without Spatial Random Effects
- CircStats Circular Statistics, from "Topics in Circular Statistics" (2001)
- roptim General Purpose Optimization in R using C++
- lavaan.survey Complex Survey Structural Equation Modeling (SEM)
- limSolve Solving Linear Inverse Models
- DRR Dimensionality Reduction via Regression
- ICSOutlier Outlier Detection Using Invariant Coordinate Selection
- rmio Provides 'mio' C++11 Header Files
- Rfast2 A Collection of Efficient and Extremely Fast R Functions II
- FD Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology
- regions Processing Regional Statistics
- zCompositions Treatment of Zeros, Left-Censored and Missing Values in Compositional Data Sets
- cmm Categorical Marginal Models
- DatabaseConnector Connecting to Various Database Platforms
- sccore Core Utilities for Single-Cell RNA-Seq
- UsingR Data Sets, Etc. for the Text "Using R for Introductory Statistics", Second Edition
- poppr Genetic Analysis of Populations with Mixed Reproduction
- concaveman A Very Fast 2D Concave Hull Algorithm
- survPresmooth Presmoothed Estimation in Survival Analysis
- variables Variable Descriptions
- RefManageR Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management
- Boom Bayesian Object Oriented Modeling
- SimComp Simultaneous Comparisons for Multiple Endpoints
- relations Data Structures and Algorithms for Relations
- betapart Partitioning Beta Diversity into Turnover and Nestedness Components
- triangle Distribution Functions and Parameter Estimates for the Triangle Distribution
- textutils Utilities for Handling Strings and Text
- phosphoricons 'Phosphor' Icons for R
- colorRamps Builds Color Tables
- readbitmap Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG,TIFF)
- datamods Modules to Import and Manipulate Data in 'Shiny'
- RVAideMemoire Testing and Plotting Procedures for Biostatistics
- ggResidpanel Panels and Interactive Versions of Diagnostic Plots using 'ggplot2'
- fANCOVA Nonparametric Analysis of Covariance
- basefun Infrastructure for Computing with Basis Functions
- dotwhisker Dot-and-Whisker Plots of Regression Results
- coneproj Primal or Dual Cone Projections with Routines for Constrained Regression
- RcppHungarian Solves Minimum Cost Bipartite Matching Problems
- ecodist Dissimilarity-Based Functions for Ecological Analysis
- fpCompare Reliable Comparison of Floating Point Numbers
- bs4Dash A 'Bootstrap 4' Version of 'shinydashboard'
- rsparse Statistical Learning on Sparse Matrices
- rtdists Response Time Distributions
- mlr3mbo Flexible Bayesian Optimization
- modules Self Contained Units of Source Code
- Rmpi Interface (Wrapper) to MPI (Message-Passing Interface)
- CVST Fast Cross-Validation via Sequential Testing
- rworldmap Mapping Global Data
- QCA Qualitative Comparative Analysis
- IsingSampler Sampling Methods and Distribution Functions for the Ising Model
- parallelDist Parallel Distance Matrix Computation using Multiple Threads
- hexView Viewing Binary Files
- censReg Censored Regression (Tobit) Models
- RWeka R/Weka Interface
- smoother Functions Relating to the Smoothing of Numerical Data
- clustree Visualise Clusterings at Different Resolutions
- rmdformats HTML Output Formats and Templates for 'rmarkdown' Documents
- rpact Confirmatory Adaptive Clinical Trial Design and Analysis
- PKI Public Key Infrastucture for R Based on the X.509 Standard
- Polychrome Qualitative Palettes with Many Colors
- DIDmultiplegtDYN Estimation in Staggered First Switch Designs, where Groups Experience their First Treatment Change at Different Points in Time
- randomcoloR Generate Attractive Random Colors
- CFtime Using CF-Compliant Calendars with Climate Projection Data
- sdmTMB Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
- tidyLPA Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source or Commercial Software
- sortable Drag-and-Drop in 'shiny' Apps with 'SortableJS'
- lidR Airborne Point Cloud Data Manipulation and Visualization for Forestry Applications
- sylly.en Language Support for 'sylly' Package: English
- botor 'AWS Python SDK' ('boto3') for R
- mratios Ratios of Coefficients in the General Linear Model
- gdistance Distances and Routes on Geographical Grids
- expsmooth Data Sets from "Forecasting with Exponential Smoothing"
- ROI.plugin.glpk 'ROI' Plug-in 'GLPK'
- bipartite Visualising Bipartite Networks and Calculating Some (Ecological) Indices
- BIEN Tools for Accessing the Botanical Information and Ecology Network Database
- logitr Logit Models w/Preference & WTP Space Utility Parameterizations
- discovr Interactive Tutorials and Data for "Discovering Statistics Using R and RStudio"
- httptest2 Test Helpers for 'httr2'
- wavethresh Wavelets Statistics and Transforms
- rockchalk Regression Estimation and Presentation
- qtl Tools for Analyzing QTL Experiments
- sgeostat An Object-Oriented Framework for Geostatistical Modeling in S+
- km.ci Confidence Intervals for the Kaplan-Meier Estimator
- scTenifoldNet Construct and Compare scGRN from Single-Cell Transcriptomic Data
- DoseFinding Planning and Analyzing Dose Finding Experiments
- bold Interface to Bold Systems API
- sfnetworks Tidy Geospatial Networks
- gvlma Global Validation of Linear Models Assumptions
- worrms World Register of Marine Species (WoRMS) Client
- findpython Functions to Find an Acceptable Python Binary
- gemtc Network Meta-Analysis Using Bayesian Methods
- rredlist 'IUCN' Red List Client
- NeuralNetTools Visualization and Analysis Tools for Neural Networks
- doMC Foreach Parallel Adaptor for 'parallel'
- bootnet Bootstrap Methods for Various Network Estimation Routines
- RcppSimdJson 'Rcpp' Bindings for the 'simdjson' Header-Only Library for 'JSON' Parsing
- EGAnet Exploratory Graph Analysis – a Framework for Estimating the Number of Dimensions in Multivariate Data using Network Psychometrics
- MatrixExtra Extra Methods for Sparse Matrices
- ggbiplot A Grammar of Graphics Implementation of Biplots
- emayili Send Email Messages
- ggwordcloud A Word Cloud Geom for 'ggplot2'
- probably Tools for Post-Processing Predicted Values
- HDInterval Highest (Posterior) Density Intervals
- rattle R Data Science Supporting Rattle
- geojsonio Convert Data from and to 'GeoJSON' or 'TopoJSON'
- googleVis R Interface to Google Charts
- merTools Tools for Analyzing Mixed Effect Regression Models
- glmtoolbox Set of Tools to Data Analysis using Generalized Linear Models
- conquer Convolution-Type Smoothed Quantile Regression
- BoomSpikeSlab MCMC for Spike and Slab Regression
- glmmML Generalized Linear Models with Clustering
- iml Interpretable Machine Learning
- RQuantLib R Interface to the 'QuantLib' Library
- hdi High-Dimensional Inference
- pvclust Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
- pins Pin, Discover, and Share Resources
- FME A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
- ridigbio Interface to the iDigBio Data API
- dcurves Decision Curve Analysis for Model Evaluation
- ggarrow Arrows for 'ggplot2'
- smd Compute Standardized Mean Differences
- robvis Visualize the Results of Risk-of-Bias (ROB) Assessments
- distr Object Oriented Implementation of Distributions
- prettymapr Scale Bar, North Arrow, and Pretty Margins in R
- mgcViz Visualisations for Generalized Additive Models
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